Single cell and subcellular biology

Ahmet F. Coskun , Guojun Han , Shih-Yu Chen , Xavier Rovira , Sizun Jiang , Christian Schürch , Yunhao Bai , Chuck Hitzman, and Garry P. Nolan.
Ion beam subcellular tomography, BioRxiv, 2019


Xavier Rovira-Clave, Sizun Jiang, Yunhao Bai, Graham Larson Barlow, Salil Bhate, Ahmet F. Coskun, Guojun Han, Bokai Zhu, Chin-Min Ho, Chuck Hitzman, Shih-Yu Chen, Felice-Alessio Bava, and Garry Nolan. Subcelular localization of drug distribution by super-resolution ion beam imaging, BioRxiv, 2019


Ahmet F. Coskun*, Umut Eser, and Saiful Islam. Cellular identity at the single-cell level. Molecular BioSystems (2016) (*Corresponding author)

cell identity

Ahmet F. Coskun and Long Cai. Dense transcript profiling in single cells by image correlation decoding. Nature Methods (2016)


Eric Lubeck*, Ahmet F. Coskun*, Timur Zhiyentayev, Mubhij Ahmad, and Long Cai. Single-cell in situ RNA profiling by sequential hybridization. Nature Methods (2014) (*Co-first author)


Precision medicine: Devices, biosensing and bioimaging

Ahmet F. Coskun,* Seda Nur Topkaya, Ali K. Yetisen, and Arif E. Cetin*. Portable Multiplex Optical Assays. Advanced Optical Materials (2018)

Stephanie Knowlton, Ashwini Joshi, Philip Syrrist, Ahmet F. Coskun, and Savas Tasoglu. 3D-Printed Smartphone-Based Point of Care tool for Fluorescence and Magnetophoresis-Based Cytometry. Lab on a Chip (2017)

Ahmet F. Coskun Arif E. Cetin, Betty Galarreta, Hatice Altug, and Aydogan Ozcan. Lensfree optofluidic plasmonic sensor for real-time and label-free monitoring of molecular binding events over a wide field-of-view. Scientific Reports (Nature Publishing Group) 4, 6789 (2014)

Ahmet F. Coskun*, Arif E. Cetin*, Betty C. Galarreta, Min Huang, David Herman, Aydogan Ozcan, and Hatice Altug. Handheld High-Throughput Plasmonic Biosensor using Computational On-Chip Imaging. Light Science and Applications (Nature Publishing Group) (2014) (*Co-first author)

Ahmet F. Coskun, and Aydogan Ozcan. Computational Imaging, Sensing and Diagnostics for Global Health Applications. Current Opinion in Biotechnology (2014)

Ikbal Sencan, Ahmet F. Coskun, Uzair Sikora, and Aydogan Ozcan. Spectral Demultiplexing in Holographic and Fluorescent On-chip Microscopy. Scientific Reports (Nature Publishing Group) (2014)

Alon Greenbaum, Wei Luo, Bahar Khademhosseini, Ting-Wei Su, Ahmet F. Coskun, and Aydogan Ozcan. Increased space-bandwidth product in pixel super-resolved lensfree on-chip microscopy. Scientific Reports (Nature Publishing Group) (2013)

Onur Mudanyanli, Euan McLeod, Wei Luo, Alon Greenbaum, Ahmet F. Coskun, Yves Hennequin, Cedric Allier, Aydogan Ozcan. Wide-field optical detection of nano-particles using on-chip microscopy and self-assembled nano-lenses. Nature Photonics (2013)

Ahmet F. Coskun, Richie Nagi, Kavyon Sadeghi, Stephen Phillips and Aydogan Ozcan. Albumin testing in urine using a smart-phone. Lab on a Chip (2013)

Ahmet F. Coskun*, Isa Navruz*, Justin Wong, Saqib Mohammad, Derek Tseng, Richie Nagi, Stephen Phillips, and Aydogan Ozcan. Smart-phone based computational microscopy using multi-frame contact imaging on a fiber-optic array. Lab on a Chip (2013) (*Co-first author)

Ahmet F. Coskun, Justin Wong, Delaram Khodadadi, Richie Nagi, Andrew Tey, and Aydogan Ozcan. A personalized food allergen testing platform on a cellphone. Lab on a Chip (2013)

Alon Greenbaum, Wei Luo, Ting-Wei Su, Zoltán Göröcs, Liang Xue, Serhan O Isikman, Ahmet F Coskun, Onur Mudanyali, and Aydogan Ozcan. Imaging without lenses: achievements and remaining challenges of wide-field on-chip microscopy. Nature Methods (2012)

Serap Altay Arpali, Caglar Arpali , Ahmet F. Coskun , Hsin-Hao Chiang and Aydogan Ozcan. High-throughput screening of large volumes of scattering media using structured illumination and fluorescent on-chip imaging. Lab on a Chip (2012)

Serhan O. Isikman, Alon Greenbaum, Wei Luo, Ahmet F. Coskun, and Aydogan Ozcan. Giga-Pixel Lensfree Holographic Microscopy and Tomography Using Color Image Sensors. PLoS ONE (2012)

Ahmet F. Coskun, Ting-Wei Su, Ikbal Sencan, and Aydogan Ozcan. Lensless Fluorescent Microscopy On a Chip. Journal of Visualized Experiments (JOVE) (2011)

Ahmet F. Coskun, Ikbal Sencan, Ting-Wei Su, and Aydogan Ozcan. Wide-field Lensless Fluorescent Microscopy Using a Tapered Fiber-optic Faceplate On a Chip. Analyst (2011)

Ahmet F. Coskun, Ikbal Sencan, Ting-Wei Su, and Aydogan Ozcan. Lensfree Fluorescent On-Chip Imaging of Transgenic Caenorhabditis elegans Over an Ultra-Wide Field-of-View. PLoS ONE (2011)

Hongying Zhu, Sam Mavandadi, Ahmet F. Coskun, Oguzhan Yaglidere, and Aydogan Ozcan. Optofluidic Fluorescent Imaging Cytometry on a Cellphone. Analytical Chemistry (2011)

Khademhosseini, Gabriel Biener, Ikbal Sencan, Ting-Wei Su, Ahmet F. Coskun and Aydogan Ozcan. Lensfree Sensing on a Micro-fluidic Chip using Plasmonic Nano-apertures. Appl. Phys. Lett. (2010)

Ahmet F. Coskun, Ting-wei Su, Ikbal Sencan, and Aydogan Ozcan. Lensfree Fluorescent On-Chip Imaging Using Compressive Sampling. Optics & Photonics News (2010)

Waheb Bishara, Ting-Wei Su, Ahmet F. Coskun, and Aydogan Ozcan. Lensfree on-chip microscopy over a wide field-of-view using pixel super-resolution. Opt. Express (2010)

Ahmet F. Coskun, Ikbal Sencan, Ting-Wei Su, and Aydogan Ozcan. Lensless wide-field fluorescent imaging on a chip using compressive decoding of sparse objects. Opt. Express (2010)

Khademhosseini, I. Sencan, G. Biener, T. Su, Ahmet F. Coskun, D. Tseng and A. Ozcan. Lensfree On-chip Imaging using Nano-structured Surfaces. Applied Physics Letters (2010)

Ahmet F. Coskun, Ting-Wei Su and Aydogan Ozcan. Wide field-of-view lens-free fluorescent imaging on a chip. Lab on a Chip (2010)

Optics: Lasers, materials and optical designs

Alphan Sennaroglu, Ahmet F. Coskun, Umit Demirbas. Analysis of solid-state saturable absorbers with temperature dependent absorption cross-sections. Optical Materials (2009)

Alper Kiraz, Yasin Karadağ, and Ahmet F. Coskun. Spectral tuning of liquid microdroplets standing on a superhydrophobic surface using electrowetting. Applied Physics Letters (2008)

Conceptuals: Education, art, commercialization and beyond

Ali Yetisen, Joe Davis, Ahmet F. Coskun, George Church, and Seok Hyun Yun. Bioart. Trends in Biotechnology, 33(12), 724-734 (2015)

Ali Yetisen, Ahmet F. Coskun, Grant England, Sangyeon Cho, Haider Butt, Jonty Hurwitz, Mathias Kolle et al. Art on the Nanoscale and Beyond. Advanced Materials, 28(9), 1724-1742 (2015)

Ali Yetisen, Lisa R. Volpatti, Ahmet F. Coskun, Sangyeon Cho, Ehsan Kamrani, Haider Butt, Ali Khademhosseini, and Seok Hyun Yun. Entrepreneurship. Lab on a Chip, 33(12), 724-734 (2015)